I would reset the afc and try setting it up by the directions. Also you should re-check the wiring. vfaq has all the wiring diagrams and wire colors(helps). Here is a link.
http://www.vfaq.com/mods/ecu-harness-1G.html
When you look at the diagram its looking at the back of plug. So the wires are coming out of the side your looking at.
~John