Here's some more pics as of friday. This is the new-ish setup for wiring. I bought some new split loom tubing for all this, so it'll be cleaned up more, but I re-routed the ignition wires and stuff to go through the secret passage above the wheel well.
This is where the stock engine harness came through. Now it's the knock and O2 sensors and the coil pack and transistor plugs.
And here's the location of the stuff.
And now I have to connect the plug wires, switch the + and - on the tps, make sure I have the right settings for starting it up and it should go.

yay.